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| - | + | This is the main production Neuroinformatics Joint Application (NinJA) Group server located in the [http://research.baycrest.org/ Rotman Research Institute] at [http://baycrest.org Baycrest]. | |
| - | == | + | == Data Repositories == |
| + | Note: all data repositories require authentication and are not available for public use. | ||
| - | + | ;[http://haumea.rotman-baycrest.on.ca:8080/xnat RRINiD (Rotman Research Institute Neuroimaging Database)] | |
| - | + | : RRINiD powered by XNAT is a complex web-based system rich in features designed to manage imaging and non-imaging data and to trigger data analysis pipelines. The system was customized to mirror the RRI lab practices and provides support for neuroimaging data management, managing internally the large quantity of produced imaging data, and maintaining long-term usability and integrity of data. [http://research.baycrest.org/neuroimaging-databases More...] | |
| - | + | ;[https://ninja.rotman-baycrest.on.ca/nrg SPReD for The Virtual Brain] | |
| + | : XNAT installation for maintaining data archives and processing for [http://thevirtualbrain.org The Virtual Brain] project. | ||
| - | [[Enter the main Wiki]] | + | ;[https://ninja.rotman-baycrest.on.ca:8443/spred SPReD for PURE MRI] |
| + | : XNAT installation for maintaining data archives and distribution of data for the PURE MRI project. If this link is blocked, the server may also be accessed at port 4444 through this [https://ninja.rotman-baycrest.on.ca:4444/spred link]. | ||
| + | |||
| + | ;Old SPReD for PURE MRI (https://orcus.rotman-baycrest.on.ca:8443/spred) | ||
| + | : Old PURE MRI data archive. Only here for historical reference, and will eventually be removed when we no longer require it. | ||
| + | |||
| + | ;[http://haumea.rotman-baycrest.on.ca:8181/xnat152 Experimental XNAT 1.5.3 Machine] | ||
| + | : An experimental version of XNAT 1.5.3. | ||
| + | |||
| + | ;[http://ninja.rotman-baycrest.on.ca/asq Experimental Advanced SPReD Query Engine (ASQ)] | ||
| + | : A multi-XNAT query system | ||
| + | |||
| + | ;[http://ninja.rotman-baycrest.on.ca/sp/ SPIRIT+] | ||
| + | : A custom-written Electronic Data Capture (EDC) system using the SPIRIT stroke registry questionnaires | ||
| + | |||
| + | == Wikis == | ||
| + | |||
| + | ;[[Docker|Docker Notes]] | ||
| + | |||
| + | ;[http://ninja.rotman-baycrest.on.ca/tiki Strother Lab TikiWiki] | ||
| + | : A controlled wiki for internal use by the Strother Lab. | ||
| + | |||
| + | ;[[Enter the main Wiki|SPReD Wiki]] | ||
| + | : Primary wiki for the Heart and Stroke Foundation of Ontario's [http://heartandstroke-centrestrokerecovery.ca/ Centre for Stroke Recovery] as related to the Stroke Patient Recovery Research Database (SPReD). [http://heartandstroke-centrestrokerecovery.ca/our-research/spred More...] | ||
| + | |||
| + | ;[[Enter the Neuroinformatics Group Wiki|Neuroinformatics Group Wiki]] | ||
| + | : The wiki used by the internal Neuroinformatics Group at RRI. | ||
| + | |||
| + | ;[http://ninja.rotman-baycrest.on.ca/redmine Neuroinformatics Group Redmine] | ||
| + | : The Redmine management system we are currently experimenting with here at NG. | ||
| + | |||
| + | == Other == | ||
| + | |||
| + | * [https://partnernet.ocbn.ca/sites/iplabs/obi/ OCBN Sharepoint Website for inDOC] | ||
| + | * [http://ninja.rotman-baycrest.on.ca/nagios Nagios System Status Monitor] | ||
| + | * [http://ninja.rotman-baycrest.on.ca/base Basic Analysis and Security Engine (BASE)] | ||
| + | * [http://doghaus.cns.utoronto.ca/cacti/graph_view.php?action=tree&tree_id=1&leaf_id=86 Cacti Monitoring of GTA / Orion] | ||
| + | |||
| + | === Ontario Brain Institute Brain-CODE === | ||
| + | |||
| + | ;[https://spred.braincode.ca/spred Neuroimaging Subsystem (SPReD)] | ||
| + | : Direct access into the neuroimaging subsystem (SPReD) within Brain-CODE. | ||
| + | |||
| + | ;[https://monitor.braincode.ca/cacti Cacti Monitor] | ||
| + | : Cacti-enabled Brain-CODE monitor site. | ||
| + | |||
| + | ;[http://ninja.rotman-baycrest.on.ca/sr Subject Registry] | ||
| + | : The first pre-alpha version of the Subject Registry. | ||
| + | |||
| + | ==== Sample Portals ==== | ||
| + | |||
| + | * Requires VPN connection to BrainCODE. | ||
| + | * [http://10.4.1.12/mica MICA] | ||
| + | * [http://10.4.1.12/joomla Joomla] | ||
| + | * [http://10.4.1.12:8080 LifeRay] | ||
Current revision as of 00:03, 18 June 2016
This is the main production Neuroinformatics Joint Application (NinJA) Group server located in the Rotman Research Institute at Baycrest.
Contents |
Data Repositories
Note: all data repositories require authentication and are not available for public use.
- RRINiD (Rotman Research Institute Neuroimaging Database)
- RRINiD powered by XNAT is a complex web-based system rich in features designed to manage imaging and non-imaging data and to trigger data analysis pipelines. The system was customized to mirror the RRI lab practices and provides support for neuroimaging data management, managing internally the large quantity of produced imaging data, and maintaining long-term usability and integrity of data. More...
- SPReD for The Virtual Brain
- XNAT installation for maintaining data archives and processing for The Virtual Brain project.
- SPReD for PURE MRI
- XNAT installation for maintaining data archives and distribution of data for the PURE MRI project. If this link is blocked, the server may also be accessed at port 4444 through this link.
- Old SPReD for PURE MRI (https://orcus.rotman-baycrest.on.ca:8443/spred)
- Old PURE MRI data archive. Only here for historical reference, and will eventually be removed when we no longer require it.
- Experimental XNAT 1.5.3 Machine
- An experimental version of XNAT 1.5.3.
- Experimental Advanced SPReD Query Engine (ASQ)
- A multi-XNAT query system
- SPIRIT+
- A custom-written Electronic Data Capture (EDC) system using the SPIRIT stroke registry questionnaires
Wikis
- Strother Lab TikiWiki
- A controlled wiki for internal use by the Strother Lab.
- SPReD Wiki
- Primary wiki for the Heart and Stroke Foundation of Ontario's Centre for Stroke Recovery as related to the Stroke Patient Recovery Research Database (SPReD). More...
- Neuroinformatics Group Wiki
- The wiki used by the internal Neuroinformatics Group at RRI.
- Neuroinformatics Group Redmine
- The Redmine management system we are currently experimenting with here at NG.
Other
- OCBN Sharepoint Website for inDOC
- Nagios System Status Monitor
- Basic Analysis and Security Engine (BASE)
- Cacti Monitoring of GTA / Orion
Ontario Brain Institute Brain-CODE
- Neuroimaging Subsystem (SPReD)
- Direct access into the neuroimaging subsystem (SPReD) within Brain-CODE.
- Cacti Monitor
- Cacti-enabled Brain-CODE monitor site.
- Subject Registry
- The first pre-alpha version of the Subject Registry.
