Main Page

From HSFCSR Neuroinformatics Wiki

(Difference between revisions)
Jump to: navigation, search
(→Wikis)
 
(29 intermediate revisions not shown)
Line 1: Line 1:
-
Welcome to the wiki for SPReD -- the Stroke Patient Recovery Research Database -- which is part of the [http://heartandstroke-centrestrokerecovery.ca/ Heart & Stroke Foundation Centre for Stroke Recovery].
+
This is the main production Neuroinformatics Joint Application (NinJA) Group server located in the [http://research.baycrest.org/ Rotman Research Institute] at [http://baycrest.org Baycrest].
-
== Quick Links ==
+
== Data Repositories ==
 +
Note: all data repositories require authentication and are not available for public use.
-
* [https://orcus.rotman-baycrest.on.ca:8443/spred Secure SPReD Database Research Access]
+
;[http://haumea.rotman-baycrest.on.ca:8080/xnat RRINiD (Rotman Research Institute Neuroimaging Database)]
-
* [http://orcus.rotman-baycrest.on.ca:3000/ Issue and Feature Tracker]
+
: RRINiD powered by XNAT is a complex web-based system rich in features designed to manage imaging and non-imaging data and to trigger data analysis pipelines. The system was customized to mirror the RRI lab practices and provides support for neuroimaging data management, managing internally the large quantity of produced imaging data, and maintaining long-term usability and integrity of data.  [http://research.baycrest.org/neuroimaging-databases More...]
-
* [[Enter the main Wiki]]
+
-
As a service for internal collaboration, this wiki requires an account to access.  Please contact Tom Gee (416-785-2500, x3372; [[File:tgeeemail.gif]]) to arrange access.
+
;[https://ninja.rotman-baycrest.on.ca/nrg SPReD for The Virtual Brain]
 +
: XNAT installation for maintaining data archives and processing for [http://thevirtualbrain.org The Virtual Brain] project.
 +
 
 +
;[https://ninja.rotman-baycrest.on.ca:8443/spred SPReD for PURE MRI]
 +
: XNAT installation for maintaining data archives and distribution of data for the PURE MRI project.  If this link is blocked, the server may also be accessed at port 4444 through this [https://ninja.rotman-baycrest.on.ca:4444/spred link].
 +
 
 +
;Old SPReD for PURE MRI (https://orcus.rotman-baycrest.on.ca:8443/spred)
 +
: Old PURE MRI data archive.  Only here for historical reference, and will eventually be removed when we no longer require it.
 +
 
 +
;[http://haumea.rotman-baycrest.on.ca:8181/xnat152 Experimental XNAT 1.5.3 Machine]
 +
: An experimental version of XNAT 1.5.3.
 +
 
 +
;[http://ninja.rotman-baycrest.on.ca/asq Experimental Advanced SPReD Query Engine (ASQ)]
 +
: A multi-XNAT query system
 +
 
 +
;[http://ninja.rotman-baycrest.on.ca/sp/ SPIRIT+]
 +
: A custom-written Electronic Data Capture (EDC) system using the SPIRIT stroke registry questionnaires
 +
 
 +
== Wikis ==
 +
 
 +
;[[Docker|Docker Notes]]
 +
 
 +
;[http://ninja.rotman-baycrest.on.ca/tiki Strother Lab TikiWiki]
 +
: A controlled wiki for internal use by the Strother Lab.
 +
 
 +
;[[Enter the main Wiki|SPReD Wiki]]
 +
: Primary wiki for the Heart and Stroke Foundation of Ontario's [http://heartandstroke-centrestrokerecovery.ca/ Centre for Stroke Recovery] as related to the Stroke Patient Recovery Research Database (SPReD).  [http://heartandstroke-centrestrokerecovery.ca/our-research/spred More...]
 +
 
 +
;[[Enter the Neuroinformatics Group Wiki|Neuroinformatics Group Wiki]]
 +
: The wiki used by the internal Neuroinformatics Group at RRI.
 +
 
 +
;[http://ninja.rotman-baycrest.on.ca/redmine Neuroinformatics Group Redmine]
 +
: The Redmine management system we are currently experimenting with here at NG.
 +
 
 +
== Other ==
 +
 
 +
* [https://partnernet.ocbn.ca/sites/iplabs/obi/ OCBN Sharepoint Website for inDOC]
 +
* [http://ninja.rotman-baycrest.on.ca/nagios Nagios System Status Monitor]
 +
* [http://ninja.rotman-baycrest.on.ca/base Basic Analysis and Security Engine (BASE)]
 +
* [http://doghaus.cns.utoronto.ca/cacti/graph_view.php?action=tree&tree_id=1&leaf_id=86 Cacti Monitoring of GTA / Orion]
 +
 
 +
=== Ontario Brain Institute Brain-CODE ===
 +
 
 +
;[https://spred.braincode.ca/spred Neuroimaging Subsystem (SPReD)]
 +
: Direct access into the neuroimaging subsystem (SPReD) within Brain-CODE.
 +
 
 +
;[https://monitor.braincode.ca/cacti Cacti Monitor]
 +
: Cacti-enabled Brain-CODE monitor site.
 +
 
 +
;[http://ninja.rotman-baycrest.on.ca/sr Subject Registry]
 +
: The first pre-alpha version of the Subject Registry.
 +
 
 +
==== Sample Portals ====
 +
 
 +
* Requires VPN connection to BrainCODE.
 +
* [http://10.4.1.12/mica MICA]
 +
* [http://10.4.1.12/joomla Joomla]
 +
* [http://10.4.1.12:8080 LifeRay]

Current revision as of 00:03, 18 June 2016

This is the main production Neuroinformatics Joint Application (NinJA) Group server located in the Rotman Research Institute at Baycrest.

Contents

Data Repositories 

Note: all data repositories require authentication and are not available for public use.
RRINiD (Rotman Research Institute Neuroimaging Database)
RRINiD powered by XNAT is a complex web-based system rich in features designed to manage imaging and non-imaging data and to trigger data analysis pipelines. The system was customized to mirror the RRI lab practices and provides support for neuroimaging data management, managing internally the large quantity of produced imaging data, and maintaining long-term usability and integrity of data. More...
SPReD for The Virtual Brain
XNAT installation for maintaining data archives and processing for The Virtual Brain project.
SPReD for PURE MRI
XNAT installation for maintaining data archives and distribution of data for the PURE MRI project. If this link is blocked, the server may also be accessed at port 4444 through this link.
Old SPReD for PURE MRI (https://orcus.rotman-baycrest.on.ca:8443/spred)
Old PURE MRI data archive. Only here for historical reference, and will eventually be removed when we no longer require it.
Experimental XNAT 1.5.3 Machine
An experimental version of XNAT 1.5.3.
Experimental Advanced SPReD Query Engine (ASQ)
A multi-XNAT query system
SPIRIT+
A custom-written Electronic Data Capture (EDC) system using the SPIRIT stroke registry questionnaires

Wikis

Docker Notes
Strother Lab TikiWiki
A controlled wiki for internal use by the Strother Lab.
SPReD Wiki
Primary wiki for the Heart and Stroke Foundation of Ontario's Centre for Stroke Recovery as related to the Stroke Patient Recovery Research Database (SPReD). More...
Neuroinformatics Group Wiki
The wiki used by the internal Neuroinformatics Group at RRI.
Neuroinformatics Group Redmine
The Redmine management system we are currently experimenting with here at NG.

Other

Ontario Brain Institute Brain-CODE

Neuroimaging Subsystem (SPReD)
Direct access into the neuroimaging subsystem (SPReD) within Brain-CODE.
Cacti Monitor
Cacti-enabled Brain-CODE monitor site.
Subject Registry
The first pre-alpha version of the Subject Registry.

Sample Portals

Retrieved from "http://ninja.rotman-baycrest.on.ca/wiki/index.php/Main_Page"
Personal tools